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Publications

Journals
  1. Gong, P., Basu, N., Scheuhammer, A.M., Perkins, E.J. 2009. Neurochemical and electrophysiological diagnosis of reversible neurotoxicity in earthworms exposed to sublethal concentrations of CL-20. Environ Sci Pollut Res Int. Mar 10. [Epub ahead of print]
  2. Bannon, D., Dillman, J.F., Hable, M., Phillips,C., Perkins, E.J. 2009. Global gene expression in rat brain and liver after oral exposure to the explosive hexahydro-1,3,5-trinitro-1,3,5-toluene-1,3,5-triazine (RDX). Chem. Res. Toxicol 22(4):620-5.
  3. NERC International Workshop 2009. Moving fish toxicogenomics into monitoring and regulation. Environmental Health Perspectives.
  4. Ankley, G.T., Bencic,.D., Breen, M., Collette, T., Conolly, R., Denslow, N., Ekman, D., Jensen, K., Lazorchak, J., Martinovic, D., Miller, D., Perkins, E., Orlando, E., Garcia-Reyero, N., Villeneuve, D., Wang, R., Watanabe, K. 2009. Endocrine-Disrupting Chemicals in Fish: Developing Exposure Indicators and Predictive Models of Effects based on Mechanism of Action. Aquatic toxicology 92(3):168-78
  5. Gust K., Quinn, M., Johnson, M., Escalon, L., Pirroznia, M., Guan, X., Indest, K., Deng, Y., Gong, P., Perkins, E. 2009. Neurotoxicogenomic Investigations of the Munitions Constituents RDX and 2,6-DNT in Northern Bobwhite (Colinus virginianus). Toxicological Sciences 110(1):168-80
  6. Quinn , M. J. Jr., Bazar, M. A., McFarland, C. A., Perkins, E. J., Gust, K. A., Johnson, M. S. Sublethal Effects of Subacute Exposure to RDX (1,3,5-trinitro-1,3,5-triazine) in the Northern Bobwhite, Colinus virginianus. Environ. Toxicol. Chem. (In Press)
  7. Pirooznia, M., Gong, P., Yang, J.Y., Yang, M.Q., Perkins, E.J., Deng, Y. ILOOP--a web application for two-channel microarray interwoven loop design. BMC Genomics 2008 Sep 16;9 Suppl 2:S11.
  8. Pirooznia, M., Perkins, E.J., Deng, Y. 2008. Batch Blast Extractor: an automated blastx parser application. BMC Genomics 9 Suppl 2:S10.
  9. Pirooznia, M., Habib, T., Perkins, E.J., Deng, Y. 2008. GOfetcher: A Database with Complex Searching Facility for Gene Ontology. Bioinformatics 24(21):2561-3.
  10. Gong, P., Guan, X., Inouye, L.S., Deng, Y., Pirooznia, M., Perkins, E.J. 2008 Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida. BMC Genomics 9(Suppl 1):S15
  11. Gong, P., Guan, X., Inouye, L.S., Pirooznia, M., Indest, K., Athow, R., Deng, Y., Perkins, E.J. 2007. Toxicogenomic Analysis Provides New Insights into Molecular Mechanisms of the Sublethal Toxicity of 2,4,6-Trinitrotoluene in Eisenia fetida. Environ Sci Technol 41(23):8195-202.
  12. Li, P., Zhang, C., Perkins, E.J., Gong, P., Deng, Y. 2007. Comparison of PBN and DBN Approaches for Inferring Gene Regulatory Networks. BMC Bioinformatics Nov 1;8 Suppl 7:S13
  13. Perkins, E.J., Gust, K., Steevens, J. 2007. Toxicogenomic assessment of the population level impacts of contaminants. Integr Environ Assess Manag. 3:559-566
  14. Pirooznia, M., Gong, P., Guan, X., Athow, R., Inouye, L., Yang, K., Perkins, E.J., Deng, Y. 2007. Analysis and Functional Annotation of Expressed Sequence Tags from the Earthworm Eisenia fetida. BMC Bioinformatics 8 Suppl 7:S7
  15. Wintz, H., Yoo, L.J., Loguinov, A., Wu, Y.Y., Steevens, J.A., Holland, R.D., Beger, R.D., Perkins, E.J., Hughes, O., Vulpe, C.D. 2006. Gene expression profiles in fathead minnow exposed to 2,4-DNT: correlation with toxicity in mammals. Toxicol Sci. 2006 94:71-82.
  16. Ankley, G.T., Daston, G.P., Degitz, S.J., Denslow, N.D., Hoke, R.A., Kennedy, S.W., Miracle, A.L., Perkins, E.J., Snape, J., Tillitt, D.E., Tyler, C.R., Versteeg, D. 2006. Toxicogenomics in regulatory ecotoxicology. Environ Sci Technol 40(13):4055-65.

Books and book chapters
  1. Garcia-Reyero, N., Perkins, E.J. 2010. The endocrine disruption forecast: Are adverse effects predictable? In The HPG axis in teleost fish. Book chapter in press.
  2. Inouye, L., Lachance, B., Gong, P. 2008. Chapter 8. Genotoxicity of explosives. In: Ecotoxicology of Explosives, ed. Sunahara, G.I. et al., CRC Press.
  3. Kuperman RG, Simini M, Siciliano SD, Gong P. 2008. Chapter 4. Effects of energetic materials on soil organisms. In: Ecotoxicology of Explosives, ed. Sunahara, G.I. et al., CRC Press.
  4. Perkins, E., Denslow, D., Chipman, K., Guiney, P.D., Oris, J., Poynton, H., Robidoux, P.Y., Scroggins, R., Van Der Kraak, G. 2007. Application of Genomics to Assessment of the Ecological Risk of Complex Environmental Mixtures in Toxicogenomics in Ecological Risk Assessment.
  5. Ankley, G.T., Miracle, A., Perkins, E.J., Daston, G.P. (Eds.) Taylor and Francis, SETAC Press.

Other publications
  1. Bannon, D.I., Johnson, M., Williams, L., Adams, V., Perkins, E.J., Gust, K., Gong, P. 2009. Comment on RDX and miRNA Expression in B6C3F1 Mice. Environmental Health Perspectives 117: A97-98 doi:10.1289/ehp.0800276
  2. Cao, C. 2008. Toxicology study No. 87-XE-0982-09, In vitro study of hexahydro-1,3,5-trinitro1.3.5-triazine (RDX) metabolism in human liver. Aberdeen Proving Ground, MD: US Army Center for Health Promotion and Preventative Medicine,
  3. Chen, X., Gust, K. A., Wilbanks, M. S., Perkins, E. J., Baker, N. D., Pham, D., Scanlan, L., and Vulpe, C. 2010. Supercomputer Assembly and Annotation of Transcriptomes for Assessing Impact of Army Stressors on Ecological Receptors. 27th Army Science Conference Proceedings, Paper No.: LP-013, 2010.
Environmental Laboratory